No. words: 1208; after pruning: 1182


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.2 (1,1:472)  449  0.00 0.21 0.00  KSU016_B12_BF483640Ld10P006C06C121F1_094.ab1        2   472 (122)  C KSU017_B12_BF483640Ld10P006C06C121R1_094.ab1   (141)   473     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C KSU017_B12_BF483640Ld10P006C06C121R1_094.ab1   614 
  459    KSU016_B12_BF483640Ld10P006C06C121F1_094.ab1   318 
  507  C KSU017_B12_BF483640Ld10P006C06C121R1_094.ab1   108 
  531    KSU016_B12_BF483640Ld10P006C06C121F1_094.ab1   390 
Contig length: old 735, new 735

Contig length: old 735, new 735
New start: 0