No. words: 1200; after pruning: 1174


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:469)  447  0.00 0.00 0.21  KSU016_C12_BF483640Ld11P006C06C121F1_092.ab1        1   470 (117)  C KSU017_C12_BF483640Ld11P006C06C121R1_092.ab1   (144)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C KSU017_C12_BF483640Ld11P006C06C121R1_092.ab1   613 
  512    KSU016_C12_BF483640Ld11P006C06C121F1_092.ab1   368 
Contig length: old 730, new 731

Contig length: old 731, new 731
New start: 0