No. words: 1191; after pruning: 1165


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:458)  437  0.00 0.22 0.00  KSU016_E12_BF483640Ld13P006C06C121F1_088.ab1        2   459 (135)  C KSU017_E12_BF483640Ld13P006C06C121R1_088.ab1   (138)   459     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C KSU017_E12_BF483640Ld13P006C06C121R1_088.ab1   597 
  536    KSU016_E12_BF483640Ld13P006C06C121F1_088.ab1   398 
Contig length: old 732, new 732

Contig length: old 732, new 732
New start: 0