No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:451)  436  0.00 0.00 0.00  KSU016_G12_BF483640Ld15P006C06C121F1_084.ab1        1   452 (153)  C KSU017_G12_BF483640Ld15P006C06C121R1_084.ab1   (172)   452     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C KSU017_G12_BF483640Ld15P006C06C121R1_084.ab1   624 
  556    KSU016_G12_BF483640Ld15P006C06C121F1_084.ab1   384 
  572  C KSU017_G12_BF483640Ld15P006C06C121R1_084.ab1    53 
  576    KSU016_G12_BF483640Ld15P006C06C121F1_084.ab1   404 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0