No. words: 1008; after pruning: 982


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:467)  454  0.00 0.00 0.00  KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1        1   468 (37)  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   (35)   468     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   503 
   63    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1    28 
   71  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   433 
   95    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1    60 
   99  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   405 
  107    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1    72 
  115  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   389 
  123    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1    88 
  127  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   377 
  159    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1   124 
  163  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   341 
  215    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1   180 
  327  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   177 
  335    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1   300 
  347  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   157 
  359    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1   324 
  371  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   133 
  379    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1   344 
  383  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1   121 
  391    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1   356 
  415  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1    89 
  419    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1   384 
  435  C KSU003_A08_BF483640Tu01P006C06C121R1_053.ab1    69 
  455    KSU002_A08_BF483640Tu01P006C06C121F1_053.ab1   420 
Contig length: old 540, new 540

Contig length: old 540, new 540
New start: 0