No. words: 1007; after pruning: 981


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:468)  454  0.00 0.00 0.00  KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1        1   469 (42)  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   (27)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   496 
   67    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1    40 
   75  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   422 
   83    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1    56 
   87  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   410 
   91    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1    64 
  143  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   354 
  167    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   140 
  171  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   326 
  223    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   196 
  287  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   210 
  299    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   272 
  307  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   190 
  323    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   296 
  331  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   166 
  335    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   308 
  351  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   146 
  355    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   328 
  367  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1   130 
  371    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   344 
  399  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1    98 
  403    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   376 
  411  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1    86 
  419    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   392 
  435  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1    62 
  439    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   412 
  447  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1    50 
  455    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   428 
  463  C KSU007_D04_BF483640Tu02P006C06C121R1_030.ab1    34 
  483    KSU006_D04_BF483640Tu02P006C06C121F1_030.ab1   456 
Contig length: old 538, new 538

Contig length: old 538, new 538
New start: 0