No. words: 1014; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.8 (1,1:487)  471  0.21 0.00 0.21  KSU006_B08_BF485396As01P009B05B111F1_061.ab1        1   484 (15)  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   (28)   487     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   515 
   37    KSU006_B08_BF485396As01P009B05B111F1_061.ab1     9 
   45  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   471 
   61    KSU006_B08_BF485396As01P009B05B111F1_061.ab1    33 
   65  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   451 
   89    KSU006_B08_BF485396As01P009B05B111F1_061.ab1    61 
   93  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   423 
  137    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   109 
  161  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   355 
  165    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   137 
  177  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   339 
  189    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   161 
  193  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   323 
  205    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   177 
  221  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   295 
  265    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   237 
  285  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   231 
  325    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   297 
  333  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   183 
  337    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   309 
  341  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   175 
  345    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   317 
  349  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   167 
  381    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   353 
  397  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   119 
  401    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   373 
  405  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1   111 
  413    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   385 
  417  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1    99 
  421    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   393 
  438  C KSU007_B08_BF485396As01P009B05B111R1_061.ab1    78 
  470    KSU006_B08_BF485396As01P009B05B111F1_061.ab1   442 
Contig length: old 526, new 527

Contig length: old 527, new 527
New start: 0