No. words: 1011; after pruning: 985


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:464)  452  0.22 0.00 0.22  KSU050_B11_BF485396As02P009B05B0111F1_093.ab1        1   465 (51)  C KSU051_B11_BF485396As02P009B05B0111R1_093.ab1   (31)   464     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C KSU051_B11_BF485396As02P009B05B0111R1_093.ab1   495 
  396    KSU050_B11_BF485396As02P009B05B0111F1_093.ab1   365 
Contig length: old 546, new 547

Contig length: old 547, new 547
New start: 0