No. words: 1004; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:482)  465  0.00 0.00 0.62  KSU008_H09_BF485396At01P009B05B111F1_076.ab1        1   485 (16)  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   (21)   482     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   503 
   33    KSU008_H09_BF485396At01P009B05B111F1_076.ab1    12 
   41  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   463 
   85    KSU008_H09_BF485396At01P009B05B111F1_076.ab1    64 
   89  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   415 
  125    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   104 
  137  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   367 
  141    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   120 
  145  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   359 
  153    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   132 
  157  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   347 
  185    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   164 
  201  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   303 
  205    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   184 
  213  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   291 
  221    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   200 
  253  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   251 
  265    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   244 
  297  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   207 
  305    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   284 
  357  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1   147 
  373    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   352 
  413  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1    91 
  425    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   404 
  429  C KSU009_H09_BF485396At01P009B05B111R1_076.ab1    75 
  433    KSU008_H09_BF485396At01P009B05B111F1_076.ab1   412 
Contig length: old 521, new 522

Contig length: old 522, new 522
New start: 0