No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.5 (1,1:480)  467  0.00 0.00 0.21  KSU008_F05_BF485396At02P009B05B111F1_043.ab1        1   476 (25)  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   (21)   480     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   501 
   81    KSU008_F05_BF485396At02P009B05B111F1_043.ab1    60 
   89  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   413 
  137    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   116 
  157  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   345 
  241    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   220 
  245  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   257 
  261    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   240 
  289  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   213 
  297    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   276 
  301  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   201 
  305    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   284 
  313  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   189 
  321    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   300 
  345  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   157 
  381    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   360 
  389  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1   113 
  417    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   396 
  421  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1    81 
  429    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   408 
  449  C KSU009_F05_BF485396At02P009B05B111R1_043.ab1    53 
  453    KSU008_F05_BF485396At02P009B05B111F1_043.ab1   432 
Contig length: old 521, new 522

Contig length: old 522, new 522
New start: 0