No. words: 1022; after pruning: 996


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:462)  430  1.73 0.00 0.22  KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1        1   463 (55)  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   (42)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   504 
   47    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1     5 
  114  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   391 
  118    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1    76 
  122  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   383 
  153    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   111 
  172  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   333 
  184    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   142 
  192  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   313 
  196    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   154 
  200  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   305 
  204    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   162 
  215  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   290 
  226    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   184 
  230  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   275 
  234    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   192 
  238  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   267 
  242    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   200 
  263  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   242 
  267    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   225 
  271  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   234 
  275    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   233 
  291  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   214 
  295    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   253 
  299  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   206 
  311    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   269 
  315  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   190 
  394    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   352 
  402  C KSU051_B05_BF485396Tu02P009B05B0111R1_045.ab1   103 
  482    KSU050_B05_BF485396Tu02P009B05B0111F1_045.ab1   440 
Contig length: old 559, new 560

Contig length: old 560, new 560
New start: 0 
S Change at: 98; seg lengths: entry 1, contig 1