No. words: 1204; after pruning: 1178


Histogram of relative pair offsets, for read pairs with multiple alignments:
 0     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -4.6 -4.6 (1,1:777)  310  8.51 0.00 0.00  KSU006_C08_BG263213As01P009C05C111F1_054.ab1      192   614 (3)  C KSU007_C08_BG263213As01P009C05C111R1_054.ab1   (0)   587   165 *
  Worst pair: offset 0 
LLR breakdown: discreps: -13.0 (<20 part: -13.0 (#=36), >20:0.0 (#=0); in HQ: -13.0, out HQ 0.0), match: 8.6  trail: -0.3  total: -4.7  310  8.51 0.00 0.00  KSU006_C08_BG263213As01P009C05C111F1_054.ab1      192   614 (3)  C KSU007_C08_BG263213As01P009C05C111R1_054.ab1   (0)   587   165 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.6       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  130 nodes

 67 str. conn. components

Path
    1    KSU006_C08_BG263213As01P009C05C111F1_054.ab1     1 
  203  C KSU007_C08_BG263213As01P009C05C111R1_054.ab1   576 
Contig length: old 778, new 778

Contig length: old 778, new 778
New start: 0 
S Change at: 199; seg lengths: entry 1, contig 1