No. words: 1555; after pruning: 1529


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.2 (1,1:768)  648  4.81 0.00 0.13  KSU050_C11_BG263213As02P009C05C0111F1_091.ab1        1   769 (11)  C KSU051_C11_BG263213As02P009C05C0111R1_091.ab1   (7)   768     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C KSU051_C11_BG263213As02P009C05C0111R1_091.ab1   775 
   15    KSU050_C11_BG263213As02P009C05C0111F1_091.ab1     8 
  160  C KSU051_C11_BG263213As02P009C05C0111R1_091.ab1   616 
  176    KSU050_C11_BG263213As02P009C05C0111F1_091.ab1   169 
  197  C KSU051_C11_BG263213As02P009C05C0111R1_091.ab1   579 
  767    KSU050_C11_BG263213As02P009C05C0111F1_091.ab1   761 
Contig length: old 786, new 786

Contig length: old 786, new 787
New start: 0 
S Change at: 11; seg lengths: entry 1, contig 1
I Change at: 754; seg lengths: entry 1, contig 0