No. words: 935; after pruning: 909


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:427)  416  0.00 0.00 0.47  KSU050_C05_BG263213Tu02P009C05C0111F1_043.ab1        1   429 (41)  C KSU051_C05_BG263213Tu02P009C05C0111R1_043.ab1   (38)   427     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C KSU051_C05_BG263213Tu02P009C05C0111R1_043.ab1   465 
  278    KSU050_C05_BG263213Tu02P009C05C0111F1_043.ab1   240 
Contig length: old 507, new 508

Contig length: old 508, new 508
New start: 0