No. words: 1497; after pruning: 1471


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:1141)  346  0.28 0.00 0.00  KSU050_E11_BG275006As02P009E05E0111F1_087.ab1      454   808 (0)  C KSU051_E11_BG275006As02P009E05E0111R1_087.ab1   (0)   689   335 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1    KSU050_E11_BG275006As02P009E05E0111F1_087.ab1     1 
  485  C KSU051_E11_BG275006As02P009E05E0111R1_087.ab1   658 
  493    KSU050_E11_BG275006As02P009E05E0111F1_087.ab1   493 
  521  C KSU051_E11_BG275006As02P009E05E0111R1_087.ab1   622 
Contig length: old 1142, new 1142

Contig length: old 1142, new 1142
New start: 0