No. words: 1464; after pruning: 1438


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:1156)  299  0.33 0.00 0.00  KSU008_H01_BG275006Tu01P009E05E111F1_012.ab1      443   749 (0)  C KSU009_H01_BG275006Tu01P009E05E111R1_012.ab1   (0)   715   409 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  152 nodes

 78 str. conn. components

Path
    1    KSU008_H01_BG275006Tu01P009E05E111F1_012.ab1     1 
  604  C KSU009_H01_BG275006Tu01P009E05E111R1_012.ab1   554 
  616    KSU008_H01_BG275006Tu01P009E05E111F1_012.ab1   616 
  620  C KSU009_H01_BG275006Tu01P009E05E111R1_012.ab1   538 
  632    KSU008_H01_BG275006Tu01P009E05E111F1_012.ab1   632 
  640  C KSU009_H01_BG275006Tu01P009E05E111R1_012.ab1   518 
  644    KSU008_H01_BG275006Tu01P009E05E111F1_012.ab1   644 
  652  C KSU009_H01_BG275006Tu01P009E05E111R1_012.ab1   506 
  736    KSU008_H01_BG275006Tu01P009E05E111F1_012.ab1   736 
  740  C KSU009_H01_BG275006Tu01P009E05E111R1_012.ab1   418 
Contig length: old 1157, new 1157

Contig length: old 1157, new 1157
New start: 0