No. words: 1808; after pruning: 1782


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:1141)  641  0.45 0.00 0.00  KSU050_E05_BG275006Tu02P009E05E0111F1_039.ab1      218   883 (0)  C KSU051_E05_BG275006Tu02P009E05E0111R1_039.ab1   (0)   925   260 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1    KSU050_E05_BG275006Tu02P009E05E0111F1_039.ab1     1 
  613  C KSU051_E05_BG275006Tu02P009E05E0111R1_039.ab1   530 
Contig length: old 1142, new 1142

Contig length: old 1142, new 1142
New start: 0