No. words: 1596; after pruning: 1570


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.6 (1,1:909)  621  0.62 0.00 0.00  KSU050_G11_BG313415As02P009G05G0111F1_083.ab1        1   645 (2)  C KSU051_G11_BG313415As02P009G05G0111R1_083.ab1   (39)   910   266 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C KSU051_G11_BG313415As02P009G05G0111R1_083.ab1   949 
   47    KSU050_G11_BG313415As02P009G05G0111F1_083.ab1     8 
   67  C KSU051_G11_BG313415As02P009G05G0111R1_083.ab1   883 
   71    KSU050_G11_BG313415As02P009G05G0111F1_083.ab1    32 
  333  C KSU051_G11_BG313415As02P009G05G0111R1_083.ab1   617 
  337    KSU050_G11_BG313415As02P009G05G0111F1_083.ab1   298 
  345  C KSU051_G11_BG313415As02P009G05G0111R1_083.ab1   605 
  349    KSU050_G11_BG313415As02P009G05G0111F1_083.ab1   310 
  361  C KSU051_G11_BG313415As02P009G05G0111R1_083.ab1   589 
  369    KSU050_G11_BG313415As02P009G05G0111F1_083.ab1   330 
  381  C KSU051_G11_BG313415As02P009G05G0111R1_083.ab1   569 
  445    KSU050_G11_BG313415As02P009G05G0111F1_083.ab1   406 
  449  C KSU051_G11_BG313415As02P009G05G0111R1_083.ab1   501 
Contig length: old 949, new 949

Contig length: old 949, new 950
New start: 0 
I Change at: 84; seg lengths: entry 1, contig 0