No. words: 1238; after pruning: 1198


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.4 (1,1:1058)  140  6.18 0.56 0.00  KSU006_H08_BG606980As01P009H05H111F1_064.ab1      635   812 (0)  C KSU007_H08_BG606980As01P009H05H111R1_064.ab1   (0)   426   248 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  62 nodes

 33 str. conn. components

Path
    1    KSU006_H08_BG606980As01P009H05H111F1_064.ab1     1 
  725  C KSU007_H08_BG606980As01P009H05H111R1_064.ab1   336 
  772    KSU006_H08_BG606980As01P009H05H111F1_064.ab1   771 
  785  C KSU007_H08_BG606980As01P009H05H111R1_064.ab1   276 
  801    KSU006_H08_BG606980As01P009H05H111F1_064.ab1   800 
  805  C KSU007_H08_BG606980As01P009H05H111R1_064.ab1   256 
Contig length: old 1059, new 1060

Contig length: old 1060, new 1060
New start: 0 
S Change at: 637; seg lengths: entry 1, contig 1