No. words: 1531; after pruning: 1505


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:1000)  518  0.19 0.00 0.00  KSU008_D10_BG606980At01P009H05H111F1_078.ab1      268   797 (0)  C KSU009_D10_BG606980At01P009H05H111R1_078.ab1   (0)   734   205 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1    KSU008_D10_BG606980At01P009H05H111F1_078.ab1     1 
  511  C KSU009_D10_BG606980At01P009H05H111R1_078.ab1   491 
  515    KSU008_D10_BG606980At01P009H05H111F1_078.ab1   515 
  563  C KSU009_D10_BG606980At01P009H05H111R1_078.ab1   439 
  637    KSU008_D10_BG606980At01P009H05H111F1_078.ab1   637 
  641  C KSU009_D10_BG606980At01P009H05H111R1_078.ab1   361 
  645    KSU008_D10_BG606980At01P009H05H111F1_078.ab1   645 
  649  C KSU009_D10_BG606980At01P009H05H111R1_078.ab1   353 
Contig length: old 1001, new 1001

Contig length: old 1001, new 1001
New start: 0