No. words: 1619; after pruning: 1593


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:1119)  480  0.40 0.00 0.00  KSU008_B02_BG606980Tu01P009H05H111F1_013.ab1      344   842 (0)  C KSU009_B02_BG606980Tu01P009H05H111R1_013.ab1   (0)   777   279 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1    KSU008_B02_BG606980Tu01P009H05H111F1_013.ab1     1 
  583  C KSU009_B02_BG606980Tu01P009H05H111R1_013.ab1   538 
  587    KSU008_B02_BG606980Tu01P009H05H111F1_013.ab1   587 
  615  C KSU009_B02_BG606980Tu01P009H05H111R1_013.ab1   506 
  619    KSU008_B02_BG606980Tu01P009H05H111F1_013.ab1   619 
  623  C KSU009_B02_BG606980Tu01P009H05H111R1_013.ab1   498 
  683    KSU008_B02_BG606980Tu01P009H05H111F1_013.ab1   683 
  687  C KSU009_B02_BG606980Tu01P009H05H111R1_013.ab1   434 
  711    KSU008_B02_BG606980Tu01P009H05H111F1_013.ab1   711 
  722  C KSU009_B02_BG606980Tu01P009H05H111R1_013.ab1   399 
Contig length: old 1120, new 1120

Contig length: old 1120, new 1120
New start: 0