No. words: 1214; after pruning: 1188


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:443)  435  0.00 0.23 0.00  KSU041_C07_BM134276Ld03P009A06A121F2_059.ab1        1   444 (185)  C KSU042_C07_BM134276Ld03P009A06A121R2_059.ab1   (140)   445     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C KSU042_C07_BM134276Ld03P009A06A121R2_059.ab1   585 
  364    KSU041_C07_BM134276Ld03P009A06A121F2_059.ab1   223 
  372  C KSU042_C07_BM134276Ld03P009A06A121R2_059.ab1   214 
  504    KSU041_C07_BM134276Ld03P009A06A121F2_059.ab1   363 
  520  C KSU042_C07_BM134276Ld03P009A06A121R2_059.ab1    66 
  536    KSU041_C07_BM134276Ld03P009A06A121F2_059.ab1   395 
Contig length: old 770, new 770

Contig length: old 770, new 770
New start: 0