No. words: 1205; after pruning: 1179


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:433)  430  0.00 0.00 0.00  KSU041_G07_BM134276Ld07P009A06A121F2_051.ab1        1   434 (185)  C KSU042_G07_BM134276Ld07P009A06A121R2_051.ab1   (152)   434     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C KSU042_G07_BM134276Ld07P009A06A121R2_051.ab1   586 
  364    KSU041_G07_BM134276Ld07P009A06A121F2_051.ab1   212 
  372  C KSU042_G07_BM134276Ld07P009A06A121R2_051.ab1   215 
  448    KSU041_G07_BM134276Ld07P009A06A121F2_051.ab1   296 
  468  C KSU042_G07_BM134276Ld07P009A06A121R2_051.ab1   119 
  492    KSU041_G07_BM134276Ld07P009A06A121F2_051.ab1   340 
Contig length: old 771, new 771

Contig length: old 771, new 771
New start: 0