No. words: 1209; after pruning: 1183


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:433)  430  0.00 0.00 0.00  KSU041_G08_BM134276Ld15P009A06A121F2_052.ab1        1   434 (158)  C KSU042_G08_BM134276Ld15P009A06A121R2_052.ab1   (183)   434     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C KSU042_G08_BM134276Ld15P009A06A121R2_052.ab1   617 
  395    KSU041_G08_BM134276Ld15P009A06A121F2_052.ab1   212 
  407  C KSU042_G08_BM134276Ld15P009A06A121R2_052.ab1   211 
  535    KSU041_G08_BM134276Ld15P009A06A121F2_052.ab1   352 
  551  C KSU042_G08_BM134276Ld15P009A06A121R2_052.ab1    67 
  567    KSU041_G08_BM134276Ld15P009A06A121F2_052.ab1   384 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0