No. words: 1662; after pruning: 1636


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:697)  689  0.00 0.00 0.00  KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1        1   698 (103)  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   (163)   698     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   861 
  183    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1    20 
  187  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   675 
  191    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1    28 
  207  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   655 
  211    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1    48 
  223  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   639 
  227    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1    64 
  243  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   619 
  255    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1    92 
  283  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   579 
  291    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1   128 
  307  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   555 
  323    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1   160 
  347  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   515 
  355    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1   192 
  647  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   215 
  651    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1   488 
  675  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1   187 
  687    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1   524 
  779  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1    83 
  799    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1   636 
  811  C KSU042_A09_BM134287Ld01P009B06B121R2_079.ab1    51 
  831    KSU041_A09_BM134287Ld01P009B06B121F2_079.ab1   668 
Contig length: old 964, new 964

Contig length: old 964, new 964
New start: 0