No. words: 1708; after pruning: 1668


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:695)  687  0.00 0.00 0.00  KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1        1   696 (174)  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1   (142)   696     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1   838 
  146    KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1     4 
  150  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1   689 
  162    KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1    20 
  226  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1   613 
  234    KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1    92 
  254  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1   585 
  266    KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1   124 
  290  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1   549 
  302    KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1   160 
  750  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1    89 
  770    KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1   628 
  786  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1    53 
  790    KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1   648 
  794  C KSU042_C09_BM134287Ld03P009B06B121R2_075.ab1    45 
  810    KSU041_C09_BM134287Ld03P009B06B121F2_075.ab1   668 
Contig length: old 1012, new 1012

Contig length: old 1012, new 1012
New start: 0 
S Change at: 927; seg lengths: entry 1, contig 1