No. words: 1714; after pruning: 1688


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 14.6 (1,1:704)  686  0.00 0.00 0.14  KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1        7   705 (171)  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   (140)   698     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   838 
  148    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1    14 
  152  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   687 
  156    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1    22 
  168  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   671 
  172    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1    38 
  204  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   635 
  212    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1    78 
  224  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   615 
  232    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1    98 
  248  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   591 
  252    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   118 
  260  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   579 
  272    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   138 
  284  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   555 
  304    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   170 
  324  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   515 
  332    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   198 
  344  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   495 
  348    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   214 
  652  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   187 
  664    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   530 
  676  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1   163 
  688    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   554 
  756  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1    83 
  776    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   642 
  796  C KSU042_D09_BM134287Ld04P009B06B121R2_073.ab1    43 
  816    KSU041_D09_BM134287Ld04P009B06B121F2_073.ab1   682 
Contig length: old 1009, new 1010

Contig length: old 1010, new 1010
New start: 0