No. words: 1708; after pruning: 1682


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:701)  688  0.00 0.00 0.14  KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1        1   702 (165)  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   (140)   701     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   841 
  160    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1    20 
  168  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   674 
  176    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1    36 
  184  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   658 
  192    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1    52 
  196  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   646 
  212    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1    72 
  220  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   622 
  232    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1    92 
  244  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   598 
  276    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1   136 
  296  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   546 
  304    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1   164 
  328  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   514 
  332    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1   192 
  344  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   498 
  348    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1   208 
  708  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1   134 
  712    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1   572 
  768  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1    74 
  776    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1   636 
  792  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1    50 
  800    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1   660 
  804  C KSU042_F09_BM134287Ld06P009B06B121R2_069.ab1    38 
  808    KSU041_F09_BM134287Ld06P009B06B121F2_069.ab1   668 
Contig length: old 1006, new 1007

Contig length: old 1007, new 1007
New start: 0