No. words: 1699; after pruning: 1673


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:696)  683  0.00 0.00 0.14  KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1        1   697 (166)  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   (140)   696     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   836 
  152    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1    12 
  184  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   653 
  192    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1    52 
  200  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   637 
  208    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1    68 
  228  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   609 
  232    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1    92 
  252  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   585 
  256    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1   116 
  260  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   577 
  268    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1   128 
  292  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   545 
  300    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1   160 
  324  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   513 
  332    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1   192 
  356  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1   481 
  360    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1   220 
  764  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1    73 
  776    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1   636 
  796  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1    41 
  816    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1   676 
  820  C KSU042_G09_BM134287Ld07P009B06B121R2_067.ab1    17 
  824    KSU041_G09_BM134287Ld07P009B06B121F2_067.ab1   684 
Contig length: old 1002, new 1003

Contig length: old 1003, new 1003
New start: 0