No. words: 1693; after pruning: 1667


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:697)  684  0.00 0.00 0.14  KSU041_A10_BM134287Ld09P009B06B121F2_080.ab1        1   698 (159)  C KSU042_A10_BM134287Ld09P009B06B121R2_080.ab1   (139)   697     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C KSU042_A10_BM134287Ld09P009B06B121R2_080.ab1   836 
  159    KSU041_A10_BM134287Ld09P009B06B121F2_080.ab1    20 
  199  C KSU042_A10_BM134287Ld09P009B06B121R2_080.ab1   638 
  203    KSU041_A10_BM134287Ld09P009B06B121F2_080.ab1    64 
  259  C KSU042_A10_BM134287Ld09P009B06B121R2_080.ab1   578 
  267    KSU041_A10_BM134287Ld09P009B06B121F2_080.ab1   128 
  623  C KSU042_A10_BM134287Ld09P009B06B121R2_080.ab1   214 
  627    KSU041_A10_BM134287Ld09P009B06B121F2_080.ab1   488 
  747  C KSU042_A10_BM134287Ld09P009B06B121R2_080.ab1    90 
  751    KSU041_A10_BM134287Ld09P009B06B121F2_080.ab1   612 
  763  C KSU042_A10_BM134287Ld09P009B06B121R2_080.ab1    74 
  775    KSU041_A10_BM134287Ld09P009B06B121F2_080.ab1   636 
  787  C KSU042_A10_BM134287Ld09P009B06B121R2_080.ab1    50 
  823    KSU041_A10_BM134287Ld09P009B06B121F2_080.ab1   684 
Contig length: old 995, new 996

Contig length: old 996, new 996
New start: 0