No. words: 1679; after pruning: 1653


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:696)  688  0.00 0.00 0.00  KSU041_B10_BM134287Ld10P009B06B121F2_078.ab1        1   697 (159)  C KSU042_B10_BM134287Ld10P009B06B121R2_078.ab1   (126)   697     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C KSU042_B10_BM134287Ld10P009B06B121R2_078.ab1   823 
  130    KSU041_B10_BM134287Ld10P009B06B121F2_078.ab1     4 
  734  C KSU042_B10_BM134287Ld10P009B06B121R2_078.ab1    90 
  758    KSU041_B10_BM134287Ld10P009B06B121F2_078.ab1   632 
  778  C KSU042_B10_BM134287Ld10P009B06B121R2_078.ab1    46 
  794    KSU041_B10_BM134287Ld10P009B06B121F2_078.ab1   668 
  798  C KSU042_B10_BM134287Ld10P009B06B121R2_078.ab1    26 
  802    KSU041_B10_BM134287Ld10P009B06B121F2_078.ab1   676 
Contig length: old 982, new 982

Contig length: old 982, new 982
New start: 0