No. words: 1624; after pruning: 1598


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:697)  685  0.00 0.00 0.14  KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1        1   698 (103)  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   (126)   697     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   823 
  146    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1    20 
  186  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   638 
  194    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1    68 
  210  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   614 
  214    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1    88 
  238  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   586 
  254    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   128 
  274  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   550 
  286    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   160 
  310  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   514 
  318    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   192 
  326  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   498 
  334    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   208 
  610  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   214 
  614    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   488 
  638  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1   186 
  678    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   552 
  734  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1    90 
  746    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   620 
  750  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1    74 
  762    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   636 
  782  C KSU042_E10_BM134287Ld13P009B06B121R2_072.ab1    42 
  794    KSU041_E10_BM134287Ld13P009B06B121F2_072.ab1   668 
Contig length: old 926, new 927

Contig length: old 927, new 927
New start: 0