No. words: 1617; after pruning: 1591


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:697)  685  0.00 0.00 0.14  KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1        1   698 (86)  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   (136)   697     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   833 
  156    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1    20 
  196  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   638 
  200    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1    64 
  216  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   618 
  228    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1    92 
  256  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   578 
  260    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1   124 
  336  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   498 
  344    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1   208 
  608  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   226 
  616    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1   480 
  648  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   186 
  652    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1   516 
  732  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1   102 
  736    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1   600 
  744  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1    90 
  772    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1   636 
  788  C KSU042_F10_BM134287Ld14P009B06B121R2_070.ab1    46 
  804    KSU041_F10_BM134287Ld14P009B06B121F2_070.ab1   668 
Contig length: old 919, new 920

Contig length: old 920, new 920
New start: 0