No. words: 1655; after pruning: 1629


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:697)  689  0.00 0.00 0.00  KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1        1   698 (160)  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   (99)   698     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   797 
  119    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1    20 
  147  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   651 
  151    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1    52 
  163  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   635 
  171    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1    72 
  183  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   615 
  191    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1    92 
  207  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   591 
  215    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1   116 
  243  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   555 
  247    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1   148 
  327  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   471 
  335    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1   236 
  575  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1   223 
  579    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1   480 
  707  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1    91 
  735    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1   636 
  743  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1    55 
  747    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1   648 
  763  C KSU042_H10_BM134287Ld16P009B06B121R2_066.ab1    35 
  767    KSU041_H10_BM134287Ld16P009B06B121F2_066.ab1   668 
Contig length: old 957, new 957

Contig length: old 957, new 957
New start: 0