No. words: 886; after pruning: 860


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:284)  272  0.00 0.00 0.00  KSU014_F11_BM135193Ld06P006F06F121F1_085.ab1        1   285 (178)  C KSU015_F11_BM135193Ld06P006F06F121R1_085.ab1   (138)   285     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  144 nodes

 74 str. conn. components

Path
    1  C KSU015_F11_BM135193Ld06P006F06F121R1_085.ab1   423 
  214    KSU014_F11_BM135193Ld06P006F06F121F1_085.ab1    76 
  230  C KSU015_F11_BM135193Ld06P006F06F121R1_085.ab1   194 
  330    KSU014_F11_BM135193Ld06P006F06F121F1_085.ab1   192 
Contig length: old 601, new 601

Contig length: old 601, new 601
New start: 0