No. words: 1149; after pruning: 1123


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:438)  417  0.00 0.23 0.00  KSU016_A01_BM137730Ld01P006G06G121F1_015.ab1        1   439 (150)  C KSU017_A01_BM137730Ld01P006G06G121R1_015.ab1   (120)   440     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C KSU017_A01_BM137730Ld01P006G06G121R1_015.ab1   560 
  164    KSU016_A01_BM137730Ld01P006G06G121F1_015.ab1    43 
  172  C KSU017_A01_BM137730Ld01P006G06G121R1_015.ab1   389 
  176    KSU016_A01_BM137730Ld01P006G06G121F1_015.ab1    55 
  188  C KSU017_A01_BM137730Ld01P006G06G121R1_015.ab1   373 
  192    KSU016_A01_BM137730Ld01P006G06G121F1_015.ab1    71 
  196  C KSU017_A01_BM137730Ld01P006G06G121R1_015.ab1   365 
  204    KSU016_A01_BM137730Ld01P006G06G121F1_015.ab1    83 
  212  C KSU017_A01_BM137730Ld01P006G06G121R1_015.ab1   349 
  220    KSU016_A01_BM137730Ld01P006G06G121F1_015.ab1    99 
  304  C KSU017_A01_BM137730Ld01P006G06G121R1_015.ab1   257 
  308    KSU016_A01_BM137730Ld01P006G06G121F1_015.ab1   187 
Contig length: old 710, new 710

Contig length: old 710, new 710
New start: 0