No. words: 1152; after pruning: 1126


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 4.4 (1,1:442)  413  0.00 0.00 0.23  KSU016_C01_BM137730Ld03P006G06G121F1_011.ab1        1   436 (142)  C KSU017_C01_BM137730Ld03P006G06G121R1_011.ab1   (132)   442     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C KSU017_C01_BM137730Ld03P006G06G121R1_011.ab1   574 
  184    KSU016_C01_BM137730Ld03P006G06G121F1_011.ab1    52 
  188  C KSU017_C01_BM137730Ld03P006G06G121R1_011.ab1   387 
  192    KSU016_C01_BM137730Ld03P006G06G121F1_011.ab1    60 
  196  C KSU017_C01_BM137730Ld03P006G06G121R1_011.ab1   379 
  220    KSU016_C01_BM137730Ld03P006G06G121F1_011.ab1    88 
  228  C KSU017_C01_BM137730Ld03P006G06G121R1_011.ab1   347 
  232    KSU016_C01_BM137730Ld03P006G06G121F1_011.ab1   100 
Contig length: old 709, new 710

Contig length: old 710, new 710
New start: 0