No. words: 1437; after pruning: 1411


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:578)  555  0.17 0.00 0.00  KSU016_D01_BM137730Ld04P006G06G121F1_009.ab1        1   579 (147)  C KSU017_D01_BM137730Ld04P006G06G121R1_009.ab1   (132)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C KSU017_D01_BM137730Ld04P006G06G121R1_009.ab1   711 
  156    KSU016_D01_BM137730Ld04P006G06G121F1_009.ab1    24 
  164  C KSU017_D01_BM137730Ld04P006G06G121R1_009.ab1   548 
  203    KSU016_D01_BM137730Ld04P006G06G121F1_009.ab1    71 
  207  C KSU017_D01_BM137730Ld04P006G06G121R1_009.ab1   505 
  231    KSU016_D01_BM137730Ld04P006G06G121F1_009.ab1    99 
  235  C KSU017_D01_BM137730Ld04P006G06G121R1_009.ab1   477 
  247    KSU016_D01_BM137730Ld04P006G06G121F1_009.ab1   115 
  355  C KSU017_D01_BM137730Ld04P006G06G121R1_009.ab1   357 
  371    KSU016_D01_BM137730Ld04P006G06G121F1_009.ab1   239 
Contig length: old 858, new 858

Contig length: old 858, new 858
New start: 0