No. words: 1196; after pruning: 1170


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.4 (1,1:441)  422  0.00 0.00 0.00  KSU016_E01_BM137730Ld05P006G06G121F1_007.ab1        1   440 (150)  C KSU017_E01_BM137730Ld05P006G06G121R1_007.ab1   (164)   442     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C KSU017_E01_BM137730Ld05P006G06G121R1_007.ab1   606 
  244    KSU016_E01_BM137730Ld05P006G06G121F1_007.ab1    80 
  256  C KSU017_E01_BM137730Ld05P006G06G121R1_007.ab1   351 
  264    KSU016_E01_BM137730Ld05P006G06G121F1_007.ab1   100 
  272  C KSU017_E01_BM137730Ld05P006G06G121R1_007.ab1   335 
  276    KSU016_E01_BM137730Ld05P006G06G121F1_007.ab1   112 
  312  C KSU017_E01_BM137730Ld05P006G06G121R1_007.ab1   295 
  316    KSU016_E01_BM137730Ld05P006G06G121F1_007.ab1   152 
Contig length: old 754, new 754

Contig length: old 754, new 754
New start: 0