No. words: 1439; after pruning: 1385


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.4 (1,1:580)  558  0.00 0.00 0.00  KSU016_F01_BM137730Ld06P006G06G121F1_005.ab1        1   579 (147)  C KSU017_F01_BM137730Ld06P006G06G121R1_005.ab1   (132)   581     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C KSU017_F01_BM137730Ld06P006G06G121R1_005.ab1   713 
  204    KSU016_F01_BM137730Ld06P006G06G121F1_005.ab1    72 
  208  C KSU017_F01_BM137730Ld06P006G06G121R1_005.ab1   506 
  252    KSU016_F01_BM137730Ld06P006G06G121F1_005.ab1   120 
Contig length: old 858, new 858

Contig length: old 858, new 858
New start: 0 
S Change at: 97; seg lengths: entry 1, contig 1
S Change at: 118; seg lengths: entry 1, contig 1