No. words: 1157; after pruning: 1131


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:447)  425  0.00 0.00 0.22  KSU016_G01_BM137730Ld07P006G06G121F1_003.ab1        1   448 (142)  C KSU017_G01_BM137730Ld07P006G06G121R1_003.ab1   (120)   447     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C KSU017_G01_BM137730Ld07P006G06G121R1_003.ab1   567 
  156    KSU016_G01_BM137730Ld07P006G06G121F1_003.ab1    36 
  164  C KSU017_G01_BM137730Ld07P006G06G121R1_003.ab1   404 
  176    KSU016_G01_BM137730Ld07P006G06G121F1_003.ab1    56 
  188  C KSU017_G01_BM137730Ld07P006G06G121R1_003.ab1   380 
  200    KSU016_G01_BM137730Ld07P006G06G121F1_003.ab1    80 
  212  C KSU017_G01_BM137730Ld07P006G06G121R1_003.ab1   356 
  224    KSU016_G01_BM137730Ld07P006G06G121F1_003.ab1   104 
Contig length: old 709, new 710

Contig length: old 710, new 710
New start: 0