No. words: 1142; after pruning: 1116


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.6 (1,1:433)  411  0.00 0.00 0.23  KSU016_H01_BM137730Ld08P006G06G121F1_001.ab1        1   434 (144)  C KSU017_H01_BM137730Ld08P006G06G121R1_001.ab1   (131)   433     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C KSU017_H01_BM137730Ld08P006G06G121R1_001.ab1   564 
  167    KSU016_H01_BM137730Ld08P006G06G121F1_001.ab1    36 
  171  C KSU017_H01_BM137730Ld08P006G06G121R1_001.ab1   394 
  199    KSU016_H01_BM137730Ld08P006G06G121F1_001.ab1    68 
  203  C KSU017_H01_BM137730Ld08P006G06G121R1_001.ab1   362 
  223    KSU016_H01_BM137730Ld08P006G06G121F1_001.ab1    92 
  267  C KSU017_H01_BM137730Ld08P006G06G121R1_001.ab1   298 
  271    KSU016_H01_BM137730Ld08P006G06G121F1_001.ab1   140 
Contig length: old 708, new 709

Contig length: old 709, new 709
New start: 0