No. words: 1186; after pruning: 1160


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:435)  409  0.00 0.23 0.23  KSU016_B02_BM137730Ld10P006G06G121F1_014.ab1        1   436 (139)  C KSU017_B02_BM137730Ld10P006G06G121R1_014.ab1   (175)   436     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C KSU017_B02_BM137730Ld10P006G06G121R1_014.ab1   611 
  208    KSU016_B02_BM137730Ld10P006G06G121F1_014.ab1    32 
  212  C KSU017_B02_BM137730Ld10P006G06G121R1_014.ab1   400 
  280    KSU016_B02_BM137730Ld10P006G06G121F1_014.ab1   104 
  300  C KSU017_B02_BM137730Ld10P006G06G121R1_014.ab1   312 
  304    KSU016_B02_BM137730Ld10P006G06G121F1_014.ab1   128 
  320  C KSU017_B02_BM137730Ld10P006G06G121R1_014.ab1   292 
  328    KSU016_B02_BM137730Ld10P006G06G121F1_014.ab1   152 
  356  C KSU017_B02_BM137730Ld10P006G06G121R1_014.ab1   256 
  364    KSU016_B02_BM137730Ld10P006G06G121F1_014.ab1   188 
Contig length: old 750, new 751

Contig length: old 751, new 751
New start: 0