No. words: 1144; after pruning: 1118


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:435)  413  0.00 0.00 0.23  KSU016_C02_BM137730Ld11P006G06G121F1_012.ab1        1   436 (142)  C KSU017_C02_BM137730Ld11P006G06G121R1_012.ab1   (131)   435     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C KSU017_C02_BM137730Ld11P006G06G121R1_012.ab1   566 
  167    KSU016_C02_BM137730Ld11P006G06G121F1_012.ab1    36 
  171  C KSU017_C02_BM137730Ld11P006G06G121R1_012.ab1   396 
  191    KSU016_C02_BM137730Ld11P006G06G121F1_012.ab1    60 
  203  C KSU017_C02_BM137730Ld11P006G06G121R1_012.ab1   364 
  219    KSU016_C02_BM137730Ld11P006G06G121F1_012.ab1    88 
Contig length: old 708, new 709

Contig length: old 709, new 709
New start: 0