No. words: 1219; after pruning: 1193


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 4.1 (1,1:459)  432  0.00 0.00 0.22  KSU016_F02_BM137730Ld14P006G06G121F1_006.ab1        1   456 (141)  C KSU017_F02_BM137730Ld14P006G06G121R1_006.ab1   (163)   459     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C KSU017_F02_BM137730Ld14P006G06G121R1_006.ab1   622 
  239    KSU016_F02_BM137730Ld14P006G06G121F1_006.ab1    76 
  247  C KSU017_F02_BM137730Ld14P006G06G121R1_006.ab1   376 
  267    KSU016_F02_BM137730Ld14P006G06G121F1_006.ab1   104 
  279  C KSU017_F02_BM137730Ld14P006G06G121R1_006.ab1   344 
  283    KSU016_F02_BM137730Ld14P006G06G121F1_006.ab1   120 
  299  C KSU017_F02_BM137730Ld14P006G06G121R1_006.ab1   324 
  307    KSU016_F02_BM137730Ld14P006G06G121F1_006.ab1   144 
  315  C KSU017_F02_BM137730Ld14P006G06G121R1_006.ab1   308 
  319    KSU016_F02_BM137730Ld14P006G06G121F1_006.ab1   156 
  347  C KSU017_F02_BM137730Ld14P006G06G121R1_006.ab1   276 
  363    KSU016_F02_BM137730Ld14P006G06G121F1_006.ab1   200 
  455  C KSU017_F02_BM137730Ld14P006G06G121R1_006.ab1   168 
  467    KSU016_F02_BM137730Ld14P006G06G121F1_006.ab1   304 
Contig length: old 759, new 760

Contig length: old 760, new 760
New start: 0