No. words: 1198; after pruning: 1172


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 4.7 (1,1:442)  416  0.00 0.00 0.23  KSU016_G02_BM137730Ld15P006G06G121F1_004.ab1        1   439 (140)  C KSU017_G02_BM137730Ld15P006G06G121R1_004.ab1   (177)   442     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C KSU017_G02_BM137730Ld15P006G06G121R1_004.ab1   619 
  225    KSU016_G02_BM137730Ld15P006G06G121F1_004.ab1    48 
  229  C KSU017_G02_BM137730Ld15P006G06G121R1_004.ab1   391 
  269    KSU016_G02_BM137730Ld15P006G06G121F1_004.ab1    92 
Contig length: old 755, new 756

Contig length: old 756, new 756
New start: 0