No. words: 1155; after pruning: 1129


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.5 (1,1:445)  418  0.00 0.00 0.23  KSU016_H02_BM137730Ld16P006G06G121F1_002.ab1        1   442 (138)  C KSU017_H02_BM137730Ld16P006G06G121R1_002.ab1   (130)   445     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C KSU017_H02_BM137730Ld16P006G06G121R1_002.ab1   575 
  170    KSU016_H02_BM137730Ld16P006G06G121F1_002.ab1    40 
  174  C KSU017_H02_BM137730Ld16P006G06G121R1_002.ab1   402 
  178    KSU016_H02_BM137730Ld16P006G06G121F1_002.ab1    48 
  210  C KSU017_H02_BM137730Ld16P006G06G121R1_002.ab1   366 
  218    KSU016_H02_BM137730Ld16P006G06G121F1_002.ab1    88 
Contig length: old 709, new 710

Contig length: old 710, new 710
New start: 0