No. words: 1490; after pruning: 1464


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:885)  600  0.00 0.00 0.00  KSU006_A09_BM138178As01P009C06C121F1_065.ab1      126   729 (0)  C KSU007_A09_BM138178As01P009C06C121R1_065.ab1   (0)   761   158 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1    KSU006_A09_BM138178As01P009C06C121F1_065.ab1     1 
  413  C KSU007_A09_BM138178As01P009C06C121R1_065.ab1   474 
  421    KSU006_A09_BM138178As01P009C06C121F1_065.ab1   421 
  425  C KSU007_A09_BM138178As01P009C06C121R1_065.ab1   462 
  449    KSU006_A09_BM138178As01P009C06C121F1_065.ab1   449 
  457  C KSU007_A09_BM138178As01P009C06C121R1_065.ab1   430 
  533    KSU006_A09_BM138178As01P009C06C121F1_065.ab1   533 
  537  C KSU007_A09_BM138178As01P009C06C121R1_065.ab1   350 
Contig length: old 886, new 886

Contig length: old 886, new 886
New start: 0