No. words: 1577; after pruning: 1551


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:838)  695  0.56 0.00 0.00  KSU008_A06_BM138178At02P009C06C121F1_037.ab1        1   712 (0)  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   (26)   839   128 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   865 
   30    KSU008_A06_BM138178At02P009C06C121F1_037.ab1     4 
   34  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   832 
   42    KSU008_A06_BM138178At02P009C06C121F1_037.ab1    16 
   54  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   812 
   69    KSU008_A06_BM138178At02P009C06C121F1_037.ab1    43 
  316  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   550 
  320    KSU008_A06_BM138178At02P009C06C121F1_037.ab1   294 
  364  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   502 
  368    KSU008_A06_BM138178At02P009C06C121F1_037.ab1   342 
  392  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   474 
  396    KSU008_A06_BM138178At02P009C06C121F1_037.ab1   370 
  432  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   434 
  456    KSU008_A06_BM138178At02P009C06C121F1_037.ab1   430 
  464  C KSU009_A06_BM138178At02P009C06C121R1_037.ab1   402 
Contig length: old 865, new 865

Contig length: old 865, new 865
New start: 0