No. words: 1719; after pruning: 1693


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.4 (1,1:892)  823  0.00 0.00 0.00  KSU041_A11_BM138178Ld01P009C06C121F2_095.ab1       23   848 (0)  C KSU042_A11_BM138178Ld01P009C06C121R2_095.ab1   (0)   871    46 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  414 nodes

 209 str. conn. components

Path
    1    KSU041_A11_BM138178Ld01P009C06C121F2_095.ab1     1 
   66  C KSU042_A11_BM138178Ld01P009C06C121R2_095.ab1   828 
   70    KSU041_A11_BM138178Ld01P009C06C121F2_095.ab1    70 
  102  C KSU042_A11_BM138178Ld01P009C06C121R2_095.ab1   792 
  106    KSU041_A11_BM138178Ld01P009C06C121F2_095.ab1   106 
  286  C KSU042_A11_BM138178Ld01P009C06C121R2_095.ab1   608 
  346    KSU041_A11_BM138178Ld01P009C06C121F2_095.ab1   346 
  374  C KSU042_A11_BM138178Ld01P009C06C121R2_095.ab1   520 
  402    KSU041_A11_BM138178Ld01P009C06C121F2_095.ab1   402 
  406  C KSU042_A11_BM138178Ld01P009C06C121R2_095.ab1   488 
  422    KSU041_A11_BM138178Ld01P009C06C121F2_095.ab1   422 
  430  C KSU042_A11_BM138178Ld01P009C06C121R2_095.ab1   464 
Contig length: old 893, new 893

Contig length: old 893, new 893
New start: 0